Index

A | B | C | D | E | F | G | H | I | K | L | N | O | P | R | S | T | U | V | W | X

A

A_filter() (ABXpy.sideop.filter_manager.FilterManager method)
ABX_filter() (ABXpy.sideop.filter_manager.FilterManager method)
ABXpy.__init__ (module)
ABXpy.analyze (module)
ABXpy.database (module)
ABXpy.database.database (module)
ABXpy.dbfun (module)
ABXpy.dbfun.dbfun (module)
ABXpy.dbfun.dbfun_column (module)
ABXpy.dbfun.dbfun_compute (module)
ABXpy.dbfun.dbfun_lookuptable (module)
ABXpy.dbfun.lookuptable_connector (module)
ABXpy.distances (module)
ABXpy.distances.distances (module)
ABXpy.distances.metrics (module)
ABXpy.distances.metrics.cosine (module)
ABXpy.h5tools (module)
ABXpy.h5tools.h52np (module)
ABXpy.h5tools.h5_handler (module)
ABXpy.h5tools.h5io (module)
ABXpy.h5tools.np2h5 (module)
ABXpy.misc (module)
ABXpy.misc.progress_display (module)
ABXpy.misc.tinytree (module)
ABXpy.misc.type_fitting (module)
ABXpy.sampling (module)
ABXpy.sampling.sampler (module)
ABXpy.score (module)
ABXpy.sideop (module)
ABXpy.sideop.filter_manager (module)
ABXpy.sideop.regressor_manager (module)
ABXpy.sideop.side_operations_manager (module)
ABXpy.task (module)
add() (ABXpy.misc.progress_display.ProgressDisplay method)
(ABXpy.sideop.side_operations_manager.SideOperationsManager method)
add_dataset() (ABXpy.h5tools.h52np.H52NP method)
(ABXpy.h5tools.np2h5.NP2H5 method)
addChild() (ABXpy.misc.tinytree.Tree method)
addChildrenFromList() (ABXpy.misc.tinytree.Tree method)
analyze() (in module ABXpy.analyze)
attrsToRoot() (ABXpy.misc.tinytree.Tree method)

B

B_filter() (ABXpy.sideop.filter_manager.FilterManager method)
buffer_empty() (ABXpy.h5tools.h52np.H52NPbuffer method)
bundle_call_info() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)
by_filter() (ABXpy.sideop.filter_manager.FilterManager method)

C

check_Call() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)
check_extensions() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
check_flatness() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)
check_Subscript() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)
chunk_size() (in module ABXpy.dbfun.dbfun_lookuptable)
classify_ABX() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
classify_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
classify_generic() (ABXpy.sideop.filter_manager.FilterManager method)
(ABXpy.sideop.regressor_manager.RegressorManager method)
(ABXpy.sideop.side_operations_manager.SideOperationsManager method)
classify_on_across_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
clear() (ABXpy.misc.tinytree.Tree method)
collapse() (in module ABXpy.analyze)
compress_index() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
compute_distances() (in module ABXpy.distances.distances)
compute_nb_levels() (ABXpy.task.Task method)
compute_statistics() (ABXpy.task.Task method)
constructFromList() (in module ABXpy.misc.tinytree)
cosine_distance() (in module ABXpy.distances.metrics.cosine)
count() (ABXpy.misc.tinytree.Tree method)
create_distance_jobs() (in module ABXpy.distances.distances)
current_tail() (ABXpy.h5tools.h52np.H52NPbuffer method)

D

dataset_empty() (ABXpy.h5tools.h52np.H52NPbuffer method)
DBfun (class in ABXpy.dbfun.dbfun)
DBfun_Column (class in ABXpy.dbfun.dbfun_column)
DBfun_Compute (class in ABXpy.dbfun.dbfun_compute)
DBfun_LookupTable (class in ABXpy.dbfun.dbfun_lookuptable)
delete() (ABXpy.h5tools.np2h5.NP2H5buffer method)
display() (ABXpy.misc.progress_display.ProgressDisplay method)
dump() (ABXpy.misc.tinytree.Tree method)

E

evaluate() (ABXpy.dbfun.dbfun.DBfun method)
(ABXpy.dbfun.dbfun_column.DBfun_Column method)
(ABXpy.dbfun.dbfun_compute.DBfun_Compute method)
(ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
evaluate_A() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
evaluate_A_B_X() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
evaluate_B() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
evaluate_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
evaluate_generic() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
evaluate_on_across_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
evaluate_X() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
extract_chunk() (ABXpy.h5tools.h5_handler.H5Handler method)

F

Features_Accessor (class in ABXpy.distances.distances)
fetch_regressor_info() (ABXpy.sideop.regressor_manager.RegressorManager method)
fill() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
FilterManager (class in ABXpy.sideop.filter_manager)
find() (ABXpy.h5tools.h5io.H5IO method)
findAttr() (ABXpy.misc.tinytree.Tree method)
findBackwards() (ABXpy.misc.tinytree.Tree method)
findChild() (ABXpy.misc.tinytree.Tree method)
findForwards() (ABXpy.misc.tinytree.Tree method)
findParent() (ABXpy.misc.tinytree.Tree method)
fit_integer_type() (in module ABXpy.misc.type_fitting)
flush() (ABXpy.h5tools.np2h5.NP2H5buffer method)

G

generate_pairs() (ABXpy.task.Task method)
generate_triplets() (ABXpy.task.Task method)
generic_filter() (ABXpy.sideop.filter_manager.FilterManager method)
generic_visit() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)
get_dtype() (in module ABXpy.dbfun.dbfun_lookuptable)
(in module ABXpy.h5tools.h5io)
get_features_from_raw() (ABXpy.distances.distances.Features_Accessor method)
get_features_from_splitted() (ABXpy.distances.distances.Features_Accessor method)
get_keys() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
get_regressor_info() (ABXpy.sideop.regressor_manager.RegressorManager method)
getDepth() (ABXpy.misc.tinytree.Tree method)
getNext() (ABXpy.misc.tinytree.Tree method)
getPrevious() (ABXpy.misc.tinytree.Tree method)
getRoot() (ABXpy.misc.tinytree.Tree method)

H

H52NP (class in ABXpy.h5tools.h52np)
H52NPbuffer (class in ABXpy.h5tools.h52np)
H5Handler (class in ABXpy.h5tools.h5_handler)
H5IO (class in ABXpy.h5tools.h5io)
H5TMP (class in ABXpy.h5tools.h5_handler)
hypergeometric_sample() (in module ABXpy.sampling.sampler)

I

IncrementalSampler (class in ABXpy.sampling.sampler)
index() (ABXpy.misc.tinytree.Tree method)
initialize_output_dsets() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
inject() (ABXpy.misc.tinytree.Tree method)
iscomplete() (ABXpy.h5tools.np2h5.NP2H5buffer method)
isDescendantOf() (ABXpy.misc.tinytree.Tree method)
isempty() (ABXpy.h5tools.h52np.H52NPbuffer method)
isSiblingOf() (ABXpy.misc.tinytree.Tree method)

K

Knuth_sampling() (in module ABXpy.sampling.sampler)

L

load() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
(in module ABXpy.database.database)
load_aux_dbs() (in module ABXpy.database.database)
load_data() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
load_metadata() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
LookupTableConnector (class in ABXpy.dbfun.lookuptable_connector)

N

nameVisitor (class in ABXpy.dbfun.dbfun_compute)
nb_lines() (in module ABXpy.h5tools.np2h5)
nb_lower_than() (ABXpy.h5tools.h52np.H52NPbuffer method)
next() (ABXpy.sampling.sampler.IncrementalSampler method)
normalize_cosine_distance() (in module ABXpy.distances.metrics.cosine)
NP2H5 (class in ABXpy.h5tools.np2h5)
NP2H5buffer (class in ABXpy.h5tools.np2h5)
npdecode() (in module ABXpy.analyze)

O

on_across_by_filter() (ABXpy.sideop.filter_manager.FilterManager method)
on_across_from_key() (in module ABXpy.task)
on_across_triplets() (ABXpy.task.Task method)
output_specs() (ABXpy.dbfun.dbfun.DBfun method)
(ABXpy.dbfun.dbfun_column.DBfun_Column method)
(ABXpy.dbfun.dbfun_compute.DBfun_Compute method)
(ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)

P

pack() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
parse() (ABXpy.dbfun.dbfun_compute.DBfun_Compute method)
parse_args() (in module ABXpy.analyze)
parse_extended_column() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
parse_extended_columns() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
pathFromRoot() (ABXpy.misc.tinytree.Tree method)
pathToRoot() (ABXpy.misc.tinytree.Tree method)
postOrder() (ABXpy.misc.tinytree.Tree method)
preOrder() (ABXpy.misc.tinytree.Tree method)
print_exception (class in ABXpy.distances.distances)
print_stats() (ABXpy.task.Task method)
print_stats_to_stream() (ABXpy.task.Task method)
process_with() (ABXpy.dbfun.dbfun_compute.DBfun_Compute method)
ProgressDisplay (class in ABXpy.misc.progress_display)

R

read() (ABXpy.h5tools.h52np.H52NPbuffer method)
(ABXpy.h5tools.h5io.H5IO method)
read_table() (in module ABXpy.database.database)
refill_buffer() (ABXpy.h5tools.h52np.H52NPbuffer method)
register() (ABXpy.misc.tinytree.Tree method)
RegressorManager (class in ABXpy.sideop.regressor_manager)
rejection_sampling() (in module ABXpy.sampling.sampler)
remove() (ABXpy.misc.tinytree.Tree method)
reparent() (ABXpy.misc.tinytree.Tree method)
replace() (ABXpy.misc.tinytree.Tree method)
result_generator() (in module ABXpy.sideop.side_operations_manager)
run_distance_job() (in module ABXpy.distances.distances)

S

sample() (ABXpy.sampling.sampler.IncrementalSampler method)
sample_without_replacement() (in module ABXpy.sampling.sampler)
score() (in module ABXpy.score)
set_A_B_X_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
set_A_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method)
set_ABX_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
set_ABX_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method)
set_B_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method)
set_by_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
set_by_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method)
set_generic_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
set_on_across_by_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method)
set_on_across_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)
set_X_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method)
siblings() (ABXpy.misc.tinytree.Tree method)
SideOperationsManager (class in ABXpy.sideop.side_operations_manager)
simple_sample() (ABXpy.sampling.sampler.IncrementalSampler method)
singleton_filter() (in module ABXpy.sideop.filter_manager)
singleton_result_generator() (in module ABXpy.sideop.side_operations_manager)
sort() (ABXpy.h5tools.h5_handler.H5Handler method)
(ABXpy.h5tools.h5io.H5IO method)

T

Task (class in ABXpy.task)
test() (in module ABXpy.h5tools.h5_handler)
test_h5io() (in module ABXpy.h5tools.h5io)
testProgressDisplay() (in module ABXpy.misc.progress_display)
Tree (class in ABXpy.misc.tinytree)
treeProp() (ABXpy.misc.tinytree.Tree static method)

U

unique_rows() (in module ABXpy.analyze)
update() (ABXpy.misc.progress_display.ProgressDisplay method)

V

vectorial_filter() (in module ABXpy.sideop.filter_manager)
verifydb() (in module ABXpy.task)
visit_Call() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)
visit_Name() (ABXpy.dbfun.dbfun_compute.nameVisitor method)
visit_Subscript() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)

W

write() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)
(ABXpy.h5tools.h5io.H5IO method)
(ABXpy.h5tools.np2h5.NP2H5buffer method)

X

X_filter() (ABXpy.sideop.filter_manager.FilterManager method)